MLcomp version alpha Statistics: 2043 users, 665 datasets, 389 programs, 18920 runs (0 queued, 4 running), 0 workers

Run 7325

Creator	tristanz
Program	Bayesian Treed Gaussian Process With Linear Limiting Model
Dataset	regression-sample
Task type	Regression
Created	2y227d ago
Download	Login required!

Status: Done!

Total Time	32s
Max Memory Usage	108M
Domain	Regression
Learn time
Train MSE	0.303
Predict train time
Test MSE	1.28
Predict test time

Log file

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   10 MD=1                                                              
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   15 CALL IDSFFT(1,NCP,NDP,XD,YD,ZD,NXI,NYI,XI,YI,ZI2,IWK,WK,MISSI)    
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      END                                                               
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gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o akima.so akima433.o akima697.o akima.new.o idbvip.o idcldp.o idgrid.o idlctn.o idpdrv.o idptip.o idptli.o idsfft.o idtang.o idxchg.o init.o tripack.o ttidbs.o  -lgfortran -lm -L/usr/lib/R/lib -lR
** R
** data
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'akima'
     Formats: text html latex example 
  akima                             text    html    latex   example
  aspline                           text    html    latex   example
  interp                            text    html    latex   example
  interpp                           text    html    latex   example
** building package indices ...
* DONE (akima)
* Installing *source* package 'maptree' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: cluster
Loading required package: rpart
** help
 >>> Building/Updating help pages for package 'maptree'
     Formats: text html latex example 
  clip.clust                        text    html    latex   example
  clip.rpart                        text    html    latex   example
  draw.clust                        text    html    latex   example
  draw.tree                         text    html    latex   example
  group.clust                       text    html    latex   example
  group.tree                        text    html    latex   example
  kgs                               text    html    latex   example
  map.groups                        text    html    latex   example
  map.key                           text    html    latex   example
  ngon                              text    html    latex   example
  oregon.bird.dist                  text    html    latex
  oregon.bird.names                 text    html    latex
  oregon.border                     text    html    latex
  oregon.env.vars                   text    html    latex
  oregon.grid                       text    html    latex
  twins.to.hclust                   text    html    latex
** building package indices ...
* DONE (maptree)
* Installing *source* package 'tgp' ...
** libs
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c all_draws.c -o all_draws.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c base.cc -o base.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c bessel_k.c -o bessel_k.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c corr.cc -o corr.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c dopt.c -o dopt.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c exp.cc -o exp.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c exp_sep.cc -o exp_sep.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c gen_covar.c -o gen_covar.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c gp.cc -o gp.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c lh.c -o lh.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c lik_post.c -o lik_post.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c linalg.c -o linalg.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c list.cc -o list.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c matern.cc -o matern.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c matrix.c -o matrix.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c model.cc -o model.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c mr_exp_sep.cc -o mr_exp_sep.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c mstructs.cc -o mstructs.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c params.cc -o params.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c predict.c -o predict.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c predict_linear.c -o predict_linear.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c rand_draws.c -o rand_draws.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c randomkit.c -o randomkit.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c rand_pdf.c -o rand_pdf.o
gcc -m32 -std=gnu99 -I/usr/include/R  -I/usr/local/include   -DRPRINT -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c rhelp.c -o rhelp.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c temper.cc -o temper.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c tgp.cc -o tgp.o
g++ -m32 -I/usr/include/R  -I/usr/local/include   -DRPRINT  -fpic  -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c tree.cc -o tree.o
g++ -m32 -shared -L/usr/local/lib -o tgp.so all_draws.o base.o bessel_k.o corr.o dopt.o exp.o exp_sep.o gen_covar.o gp.o lh.o lik_post.o linalg.o list.o matern.o matrix.o model.o mr_exp_sep.o mstructs.o params.o predict.o predict_linear.o rand_draws.o randomkit.o rand_pdf.o rhelp.o temper.o tgp.o tree.o -L/usr/lib/R/lib -lRlapack -L/usr/lib/R/lib -lRblas -lgfortran -lm   -L/usr/lib/R/lib -lR
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'tgp'
     Formats: text html latex example 
  btgp                              text    html    latex   example
  default.itemps                    text    html    latex   example
  dopt.gp                           text    html    latex   example
  exp2d                             text    html    latex
  exp2d.Z                           text    html    latex   example
  exp2d.rand                        text    html    latex   example
  friedman.1.data                   text    html    latex
  interp.loess                      text    html    latex   example
  itemps                            text    html    latex
  lhs                               text    html    latex   example
  mapT                              text    html    latex
  optim.tgp                         text    html    latex   example
  partition                         text    html    latex   example
  plot.tgp                          text    html    latex
  predict.tgp                       text    html    latex   example
  sens                              text    html    latex   example
  tgp-internal                      text    html    latex
  tgp-package                       text    html    latex
  tgp.default.params                text    html    latex
  tgp.design                        text    html    latex   example
  tgp.trees                         text    html    latex
** building package indices ...
* DONE (tgp)

The downloaded packages are in
	/tmp/RtmpAwfUxj/downloaded_packages
===== MAIN: learn based on training data =====
=== START program1: ./run learn ../dataset2/train
[1] "/usr/lib/R/bin/exec/R" "--slave"               "--no-restore"         
[4] "--file=./run"          "--args"                "learn"                
[7] "../dataset2/train"    
=== END program1: ./run learn ../dataset2/train --- OK [1s]

===== MAIN: predict/evaluate on train data =====
=== START program3: ./run stripLabels ../dataset2/train ../program0/evalTrain.in
=== END program3: ./run stripLabels ../dataset2/train ../program0/evalTrain.in --- OK [0s]
=== START program1: ./run predict ../program0/evalTrain.in ../program0/evalTrain.out

burn in:
r=1000 d=[0]; n=4
r=2000 d=[0]; n=4
r=3000 d=[0]; n=4
r=4000 d=[0]; n=4
r=5000 d=[0]; n=4

Sampling @ nn=4 pred locs:
r=1000 d=[0/1.21645 0.0354168 0/0.598852]; mh=1 n=4
r=2000 d=[0/0.0297908 0.00796651 0/0.719203]; mh=1 n=4
r=3000 d=[0]; mh=1 n=4
r=4000 d=[0.0187784 0.0322472 0.133327]; mh=1 n=4
r=5000 d=[0.0414912 0/0.048957 0.0471274]; mh=1 n=4
r=6000 d=[0]; mh=1 n=4
r=7000 d=[0.0172276 0.0167555 0.19484]; mh=1 n=4
r=8000 d=[0.0310546 0.121615 0.00290966]; mh=1 n=4
r=9000 d=[0]; mh=1 n=4
r=10000 d=[0]; mh=1 n=4
r=11000 d=[0.0639205 0/1.06567 0/0.0641794]; mh=1 n=4
r=12000 d=[0.265673 0/1.25367 0.0130169]; mh=1 n=4
r=13000 d=[0]; mh=1 n=4
r=14000 d=[0]; mh=1 n=4
r=15000 d=[0.0549665 0/1.08311 0.034591]; mh=1 n=4
Grow: 0%, 

MSE:  3.042241 
=== END program1: ./run predict ../program0/evalTrain.in ../program0/evalTrain.out --- OK [1s]
=== START program4: ./run evaluate ../dataset2/train ../program0/evalTrain.out
=== END program4: ./run evaluate ../dataset2/train ../program0/evalTrain.out --- OK [0s]

===== MAIN: predict/evaluate on test data =====
=== START program3: ./run stripLabels ../dataset2/test ../program0/evalTest.in
=== END program3: ./run stripLabels ../dataset2/test ../program0/evalTest.in --- OK [0s]
=== START program1: ./run predict ../program0/evalTest.in ../program0/evalTest.out

burn in:
r=1000 d=[0]; n=4
r=2000 d=[0]; n=4
r=3000 d=[0]; n=4
r=4000 d=[0]; n=4
r=5000 d=[0]; n=4

Sampling @ nn=2 pred locs:
r=1000 d=[0.0223374 1.11467 0.942478]; mh=1 n=4
r=2000 d=[0.0463777 0/0.790119 0/1.05678]; mh=1 n=4
r=3000 d=[0.0220499 0/0.740147 0/1.23681]; mh=1 n=4
r=4000 d=[0.00543529 0.0405736 0.927556]; mh=1 n=4
r=5000 d=[0.00483364 0/0.0470525 0/0.929113]; mh=1 n=4
r=6000 d=[0]; mh=1 n=4
r=7000 d=[0.0227361 0.625482 0/0.926269]; mh=1 n=4
r=8000 d=[0]; mh=1 n=4
r=9000 d=[0]; mh=1 n=4
r=10000 d=[0]; mh=1 n=4
r=11000 d=[0]; mh=1 n=4
r=12000 d=[0]; mh=1 n=4
r=13000 d=[0]; mh=1 n=4
r=14000 d=[0]; mh=1 n=4
r=15000 d=[0]; mh=1 n=4
Grow: 0%, 

MSE:  1.042753 
=== END program1: ./run predict ../program0/evalTest.in ../program0/evalTest.out --- OK [2s]
=== START program4: ./run evaluate ../dataset2/test ../program0/evalTest.out
=== END program4: ./run evaluate ../dataset2/test ../program0/evalTest.out --- OK [0s]


real	0m34.416s
user	0m27.610s
sys	0m2.720s

Run specification

• supervised-learning: Main entry for supervised learning for training and testing a program on a dataset.
  • (learner:Program) Bayesian Treed Gaussian Process With Linear Limiting Model:
  • (dataset:Dataset) regression-sample: Sample dataset for sanity checking.
  • (stripper:Program[Strip]) regression-utils: Validates and inspects a dataset in Regression format.
  • (evaluator:Program[Evaluate]) regression-evaluator: Evaluates predictions of Regression datasets (continuous outputs).

Results

• doTest:
  • evaluate:
    • meanSquaredError: 1.27766608329082
    • numExamples: 2
    • success: true
    • time: 0
    • totalMeanSquaredError: 2.55533216658165
  • predict:
    • success: true
    • time: 2
  • strip:
    • success: true
    • time: 0
• doTrain:
  • evaluate:
    • meanSquaredError: 0.303058261717617
    • numExamples: 4
    • success: true
    • time: 0
    • totalMeanSquaredError: 1.21223304687047
  • predict:
    • success: true
    • time: 1
  • strip:
    • success: true
    • time: 0
• exitCode: 0
• learn:
  • success: true
  • time: 1
• success: true

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